How to cite

Instructions to cite PLACNETw.

PLACNETw is a web application that helps identify and curate plasmids from Illumina whole-genome sequencing (WGS) data of bacterial isolates. It offers an easy-to-use web interface that implements the PLACNET pipeline and allows interactive exploration and manual refinement of plasmid-derived assembly contigs.

Recommended citation

Vielva, L., de Toro, M., Lanza, V.F., de la Cruz, F. (2017). PLACNETw: a web-based tool for plasmid reconstruction from bacterial genomes. Bioinformatics, 33(23), 3796–3798. https://doi.org/10.1093/bioinformatics/btx462

Also cite (if relevant)

de Toro, M., Lanza, V.F., Vielva, L., Redondo-Salvo, S., de la Cruz, F. (2020). Plasmid Reconstruction from Next-Gen Data: A Detailed Protocol for the Use of PLACNETw. In: de la Cruz, F. (eds), Horizontal Gene Transfer, Methods in Molecular Biology, 2075. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9877-7_23

Lanza, V.F., de Toro, M., Garcillán-Barcia, M.P., Mora, A., Blanco, J., Coque, T.M., de la Cruz, F. (2014). Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole-genome sequences. PLOS Genetics 10(12), e1004766. https://doi.org/10.1371/journal.pgen.1004766

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