Warning

A bug has been detected and fixed that could prevent the system from functioning correctly. If you ran any jobs during the past month, we recommend running them again to ensure they completed successfully.

Tutorial

Step-by-step video tutorial and worked examples for using PLACNETw.

This tutorial is designed to help new users get started with PLACNETw. It presents the typical workflow using a representative example dataset. Additional worked examples are provided to cover common analysis scenarios.

Video tutorial

Screen recording demonstrating PLACNETw interface. Subtitles are embedded in the video.

Examples

Worked examples with increasing difficulty. Example L58 is the one shown in the video tutorial. Difficulty is indicated next to the example name.

Name Placnet network Pruned network Forward reads Reverse reads
L53 Medium View (raw) View (curated) FASTQ R1 FASTQ R2
L55 Easy View (raw) View (curated) FASTQ R1 FASTQ R2
L57 Easy View (raw) View (curated) FASTQ R1 FASTQ R2
L58 Medium ★ View (raw) View (curated) FASTQ R1 FASTQ R2
L59 Easy View (raw) View (curated) FASTQ R1 FASTQ R2
FC2 Medium View (raw) View (curated) FASTQ R1 FASTQ R2

Difficulty levels (when provided): Easy, Medium, Hard. = shown in the video tutorial.