Tutorial
Step-by-step video tutorial and worked examples for using PLACNETw.
This tutorial is designed to help new users get started with PLACNETw. It presents the typical workflow using a representative example dataset. Additional worked examples are provided to cover common analysis scenarios.
Video tutorial
Examples
Worked examples with increasing difficulty. Example L58 is the one shown in the video tutorial. Difficulty is indicated next to the example name.
| Name | Placnet network | Pruned network | Forward reads | Reverse reads |
|---|---|---|---|---|
| L53 Medium | View (raw) | View (curated) | FASTQ R1 | FASTQ R2 |
| L55 Easy | View (raw) | View (curated) | FASTQ R1 | FASTQ R2 |
| L57 Easy | View (raw) | View (curated) | FASTQ R1 | FASTQ R2 |
| L58 Medium ★ | View (raw) | View (curated) | FASTQ R1 | FASTQ R2 |
| L59 Easy | View (raw) | View (curated) | FASTQ R1 | FASTQ R2 |
| FC2 Medium | View (raw) | View (curated) | FASTQ R1 | FASTQ R2 |